Dear all:
I have set action = 0 and indep_sample = 3 (is it reasonable?)in the params.ini and generated the .data and .txt chain files using WMAP and SN data. Now I want to add SDSS data to tighten the constraints. What I did is set action =1 and
redo_likelihoods = T
redo_theory = T
redo_cls = T
redo_pk = T
redo_skip = 0
redo_outroot = blah
redo_thin = 1
#If large difference in log likelihoods may need to offset to give sensible weights
#for exp(difference in likelihoods)
redo_likeoffset = 0
I am puzzled when I check the output .txt file. The first column (weights) is of order 10^7 or smaller . It is buggy when I getdist . Did I make any mistakes ? Thanks in advance.
ps. I have attempted to set redo_likeoffset = 10 but the resulted "weight" in .txt is still weird.
Cheers,
Gongbo Zhao
CosmoMC: Importance sampling

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 Joined: January 04 2005
 Affiliation: ICG, Portsmouth
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Re: CosmoMC: Importance sampling
Unfortunately cosmomc doesn't at the moment automatically compute a rescaling so the weights are sensible. You have to set redo_likeoffset so that the weights come out of order unity for sensible models. Since the weight is exp(\chi^2/2), the redo_offset should be around the number of independent new data points times 2.
(you expect some very small weights  those models ruled out by the new data  but for numerical reasons you want good fit models to have weights of order unity).
indep_sample=3 is OK, though importance sampling will be faster if you increase it. Small numbers also increase the size of the .data files that need to be stored. Generally you want the number to be somewhat less that the correlation length of the chains.
(you expect some very small weights  those models ruled out by the new data  but for numerical reasons you want good fit models to have weights of order unity).
indep_sample=3 is OK, though importance sampling will be faster if you increase it. Small numbers also increase the size of the .data files that need to be stored. Generally you want the number to be somewhat less that the correlation length of the chains.

 Posts: 70
 Joined: January 04 2005
 Affiliation: ICG, Portsmouth
 Contact:
CosmoMC: Importance sampling
Dear Antony:
Thanks for your help. Now I am adding SDSS data . is it right to set redo_offset = 40 ? I have tested it, the weight is huge (of order 10^13 ) ,but I can getdist the chain files and get correct results . Would you please give me some further comments ? Thanks again.
Cheers,
Gongbo Zhao
Thanks for your help. Now I am adding SDSS data . is it right to set redo_offset = 40 ? I have tested it, the weight is huge (of order 10^13 ) ,but I can getdist the chain files and get correct results . Would you please give me some further comments ? Thanks again.
Cheers,
Gongbo Zhao