Problem when running test.ini
-
- Posts: 1
- Joined: March 30 2013
- Affiliation: INFN -Bari
Problem when running test.ini
Hello,
this is the first time I use cosmomc. I installed planck likelihood following the instructions given in the readme. I compiled cosmomc using the makefile and there were no errors during compilation. However when I try to run cosmomc with test.ini the program stops without even starting:
francesco@Francesco:~/Scrivania/monte_carlo/cosmomc$ ./cosmomc test.ini
Number of MPI processes: 1
Random seeds: 15263, 7199 rand_inst: 1
compile with CLIK to use clik - see Makefile
MpiStop: 0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 0.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
I do not know why this is happening, but it seems the problem is related to MPI. Can anyone help me, please?
this is the first time I use cosmomc. I installed planck likelihood following the instructions given in the readme. I compiled cosmomc using the makefile and there were no errors during compilation. However when I try to run cosmomc with test.ini the program stops without even starting:
francesco@Francesco:~/Scrivania/monte_carlo/cosmomc$ ./cosmomc test.ini
Number of MPI processes: 1
Random seeds: 15263, 7199 rand_inst: 1
compile with CLIK to use clik - see Makefile
MpiStop: 0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 0.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
I do not know why this is happening, but it seems the problem is related to MPI. Can anyone help me, please?
-
- Posts: 1943
- Joined: September 23 2004
- Affiliation: University of Sussex
- Contact:
Re: Problem when running test.ini
Did you set up your environment variables and log out and in again before compiling, as described at
http://cosmologist.info/cosmomc/readme_planck.html
? i.e. check that
gives you the right output ("cliklike").
http://cosmologist.info/cosmomc/readme_planck.html
? i.e. check that
Code: Select all
echo $PLANCKLIKE
-
- Posts: 1943
- Joined: September 23 2004
- Affiliation: University of Sussex
- Contact:
Re: Problem when running test.ini
Try manually setting PLANCKLIKE in the source makefile, clean and make.
[sorry something went wrong with posting there, intermediate message deleted]
[sorry something went wrong with posting there, intermediate message deleted]
-
- Posts: 72
- Joined: June 13 2007
- Affiliation: Malaviya National Institute of Technology Jaipur
Problem when running test.ini
HI,
I also tried to run cosmomc with new PLanck likelihood code. It got compiled but doesn't start. when I try to run with test.ini, it gives the following error message.
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: Cluster collective optimizations enabled.
MPI Environmental Settings
MPI: MPI_MEMMAP_OFF (default: 0) : 1
MPI: MPI_VERBOSE (default: 0) : 1
MPI: Using the InfiniBand interconnect.
Number of MPI processes: 64
Error creatinging or opening chains/test_33.log
MpiStop: 32
MPI: Global rank 32 is aborting with error code -706604.
Process ID: 3603, Host: r3i1n14, Program: /home/akhileshn/planck_era/cosmomc/cosmomc
MPI: --------stack traceback-------
Error creatinging or opening chains/test_1.log
MpiStop: 0
MPI: Global rank 0 is aborting with error code -706604.
Process ID: 3637, Host: r3i1n14, Program: /home/akhileshn/planck_era/cosmomc/cosmomc
Can any one let me know what to do.
Regards,
akhielsh
I also tried to run cosmomc with new PLanck likelihood code. It got compiled but doesn't start. when I try to run with test.ini, it gives the following error message.
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: Cluster collective optimizations enabled.
MPI Environmental Settings
MPI: MPI_MEMMAP_OFF (default: 0) : 1
MPI: MPI_VERBOSE (default: 0) : 1
MPI: Using the InfiniBand interconnect.
Number of MPI processes: 64
Error creatinging or opening chains/test_33.log
MpiStop: 32
MPI: Global rank 32 is aborting with error code -706604.
Process ID: 3603, Host: r3i1n14, Program: /home/akhileshn/planck_era/cosmomc/cosmomc
MPI: --------stack traceback-------
Error creatinging or opening chains/test_1.log
MpiStop: 0
MPI: Global rank 0 is aborting with error code -706604.
Process ID: 3637, Host: r3i1n14, Program: /home/akhileshn/planck_era/cosmomc/cosmomc
Can any one let me know what to do.
Regards,
akhielsh
Re: Problem when running test.ini
mkdir chains under your cosmomc foler, plz.Akhilesh Nautiyal(akhi) wrote:HI,
I also tried to run cosmomc with new PLanck likelihood code. It got compiled but doesn't start. when I try to run with test.ini, it gives the following error message.
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: libmpi.so 'SGI MPT 2.05 10/20/11 05:35:28'
MPI: Cluster collective optimizations enabled.
MPI Environmental Settings
MPI: MPI_MEMMAP_OFF (default: 0) : 1
MPI: MPI_VERBOSE (default: 0) : 1
MPI: Using the InfiniBand interconnect.
Number of MPI processes: 64
Error creatinging or opening chains/test_33.log
MpiStop: 32
MPI: Global rank 32 is aborting with error code -706604.
Process ID: 3603, Host: r3i1n14, Program: /home/akhileshn/planck_era/cosmomc/cosmomc
MPI: --------stack traceback-------
Error creatinging or opening chains/test_1.log
MpiStop: 0
MPI: Global rank 0 is aborting with error code -706604.
Process ID: 3637, Host: r3i1n14, Program: /home/akhileshn/planck_era/cosmomc/cosmomc
Can any one let me know what to do.
Regards,
akhielsh
-
- Posts: 1943
- Joined: September 23 2004
- Affiliation: University of Sussex
- Contact:
Re: Problem when running test.ini
64 is usually far too many chains. Use 4-8.