help reqd with cosmomc
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help reqd with cosmomc
I am trying to compile cosmomc as a generic sampler on a 8-core 64-bit machine. I have installed intel fortran comiler 10.1 and intel MKL 10.0
In the subdirectory sources, tried to compile using sh Makefile_nowmap, but didnt succeed.
I used the following options ...
F90C = ifort
FFLAGS = openmp -O2 -ip -W0 -WB -fpp2 -vec_report0
LAPACKL = -L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_ia64 -lguide -lpthread
I compiled make all in the subdirectory camb with the same FFLAGS, and it worked...
uncommenting other different ifort options didnt help.
In the subdirectory sources, tried to compile using sh Makefile_nowmap, but didnt succeed.
I used the following options ...
F90C = ifort
FFLAGS = openmp -O2 -ip -W0 -WB -fpp2 -vec_report0
LAPACKL = -L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_ia64 -lguide -lpthread
I compiled make all in the subdirectory camb with the same FFLAGS, and it worked...
uncommenting other different ifort options didnt help.
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help reqd with cosmomc
Could you post the error messages that you get when running make?
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help reqd with cosmomc
Makefile_nowmap: 7: IFLAG: not found
Makefile_nowmap: 12: F90C: not found
Makefile_nowmap: 13: FFLAGS: not found
Makefile_nowmap: 14: LAPACKL: not found
Makefile_nowmap: 104: PROPOSE: not found
Makefile_nowmap: 105: CLSFILE: not found
Makefile_nowmap: 108: PARAMETERIZATION: not found
Makefile_nowmap: 110: LAPACKL: not found
Makefile_nowmap: 110: CLSLIB: not found
Makefile_nowmap: 112: FFLAGS: not found
Makefile_nowmap: 112: IFLAG: not found
Makefile_nowmap: 112: INCLUDE: not found
Makefile_nowmap: 112: F90FLAGS: not found
Makefile_nowmap: 114: DISTFILES: not found
Makefile_nowmap: 118: CLSFILE: not found
Makefile_nowmap: 118: PROPOSE: not found
Makefile_nowmap: 118: PARAMETERIZATION: not found
Makefile_nowmap: 118: utils.o: not found
Makefile_nowmap: 120: default:: not found
Makefile_nowmap: 122: all: not found
Makefile_nowmap: 124: .f.o:: not found
Makefile_nowmap: 125: Syntax error: newline unexpected
Makefile_nowmap: 12: F90C: not found
Makefile_nowmap: 13: FFLAGS: not found
Makefile_nowmap: 14: LAPACKL: not found
Makefile_nowmap: 104: PROPOSE: not found
Makefile_nowmap: 105: CLSFILE: not found
Makefile_nowmap: 108: PARAMETERIZATION: not found
Makefile_nowmap: 110: LAPACKL: not found
Makefile_nowmap: 110: CLSLIB: not found
Makefile_nowmap: 112: FFLAGS: not found
Makefile_nowmap: 112: IFLAG: not found
Makefile_nowmap: 112: INCLUDE: not found
Makefile_nowmap: 112: F90FLAGS: not found
Makefile_nowmap: 114: DISTFILES: not found
Makefile_nowmap: 118: CLSFILE: not found
Makefile_nowmap: 118: PROPOSE: not found
Makefile_nowmap: 118: PARAMETERIZATION: not found
Makefile_nowmap: 118: utils.o: not found
Makefile_nowmap: 120: default:: not found
Makefile_nowmap: 122: all: not found
Makefile_nowmap: 124: .f.o:: not found
Makefile_nowmap: 125: Syntax error: newline unexpected
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help reqd with cosmomc
my the lib/64 subdirectory inside /mkl/10.0.4.023/ has the following files....
libguide.a
libguide.so*
libiomp5.a
libiomp5.so*
libmkl_blacs_ilp64.a
libmkl_blacs_intelmpi20_ilp64.a
libmkl_blacs_intelmpi20_lp64.a
libmkl_blacs_intelmpi_ilp64.a
libmkl_blacs_intelmpi_lp64.a
libmkl_blacs_lp64.a
libmkl_blacs_openmpi_ilp64.a
libmkl_blacs_openmpi_lp64.a
libmkl_blacs_sgimpt_ilp64.a
libmkl_blacs_sgimpt_lp64.a
libmkl_blas95.a*
libmkl_cdft.a
libmkl_cdft_core.a
libmkl_core.a
libmkl_core.so*
libmkl_gf_ilp64.a
libmkl_gf_ilp64.so*
libmkl_gf_lp64.a
libmkl_gf_lp64.so*
libmkl_gnu_thread.a
libmkl_gnu_thread.so*
libmkl_i2p.so*
libmkl_intel_ilp64.a
libmkl_intel_ilp64.so*
libmkl_intel_lp64.a
libmkl_intel_lp64.so*
libmkl_intel_sp2dp.a
libmkl_intel_sp2dp.so*
libmkl_intel_thread.a
libmkl_intel_thread.so*
libmkl_ipf.a
libmkl_lapack95.a*
libmkl_lapack.a
libmkl_lapack.so*
libmkl_scalapack.a
libmkl_scalapack_ilp64.a
libmkl_scalapack_lp64.a
libmkl_sequential.a
libmkl_sequential.so*
libmkl.so*
libmkl_solver.a
libmkl_solver_ilp64.a
libmkl_solver_ilp64_sequential.a
libmkl_solver_lp64.a
libmkl_solver_lp64_sequential.a
libmkl_vml_i2p.so*
mkl95_blas.mod*
mkl95_lapack.mod*
mkl95_precision.mod*
these are slightly different than those mentioned by Antony.... Which ones should I link in the following line?
libguide.a
libguide.so*
libiomp5.a
libiomp5.so*
libmkl_blacs_ilp64.a
libmkl_blacs_intelmpi20_ilp64.a
libmkl_blacs_intelmpi20_lp64.a
libmkl_blacs_intelmpi_ilp64.a
libmkl_blacs_intelmpi_lp64.a
libmkl_blacs_lp64.a
libmkl_blacs_openmpi_ilp64.a
libmkl_blacs_openmpi_lp64.a
libmkl_blacs_sgimpt_ilp64.a
libmkl_blacs_sgimpt_lp64.a
libmkl_blas95.a*
libmkl_cdft.a
libmkl_cdft_core.a
libmkl_core.a
libmkl_core.so*
libmkl_gf_ilp64.a
libmkl_gf_ilp64.so*
libmkl_gf_lp64.a
libmkl_gf_lp64.so*
libmkl_gnu_thread.a
libmkl_gnu_thread.so*
libmkl_i2p.so*
libmkl_intel_ilp64.a
libmkl_intel_ilp64.so*
libmkl_intel_lp64.a
libmkl_intel_lp64.so*
libmkl_intel_sp2dp.a
libmkl_intel_sp2dp.so*
libmkl_intel_thread.a
libmkl_intel_thread.so*
libmkl_ipf.a
libmkl_lapack95.a*
libmkl_lapack.a
libmkl_lapack.so*
libmkl_scalapack.a
libmkl_scalapack_ilp64.a
libmkl_scalapack_lp64.a
libmkl_sequential.a
libmkl_sequential.so*
libmkl.so*
libmkl_solver.a
libmkl_solver_ilp64.a
libmkl_solver_ilp64_sequential.a
libmkl_solver_lp64.a
libmkl_solver_lp64_sequential.a
libmkl_vml_i2p.so*
mkl95_blas.mod*
mkl95_lapack.mod*
mkl95_precision.mod*
these are slightly different than those mentioned by Antony.... Which ones should I link in the following line?
Code: Select all
-L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_ia64 -lguide -lpthread
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help reqd with cosmomc
Hi Satej,
if you did not change the default size of integers, I think you should use
or alternatively if the above does not work, try
Pascal
p.s. If you feel curious, read up about Makefiles http://www.gnu.org/software/make/manual ... index.html and linking http://www.network-theory.co.uk/docs/gc ... ro_17.html.
if you did not change the default size of integers, I think you should use
Code: Select all
-L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_intel_lp64 -lguide -lpthread
Code: Select all
-L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_intel_lp64 -lguide -lmkl_intel_thread
p.s. If you feel curious, read up about Makefiles http://www.gnu.org/software/make/manual ... index.html and linking http://www.network-theory.co.uk/docs/gc ... ro_17.html.
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help reqd with cosmomc
Hi Pascal,
Thanks a lot for all your help, in particular I am grateful to you for pointing out the 2 articles to me. However this still fails to compile....
I get the following message (for both the options that you suggested).....
ifort -o ../cosmomc utils.o Matrix_utils.o settings.o cmbtypes.o Planck_like.o cmbdata.o WeakLen.o mpk.o supernovae.o SDSSLy-a-v3.o CMB_Cls_simple.o paramdef.o propose.o params_CMB.o calclike.o conjgrad_wrapper.o EstCovmat.o postprocess.o MCMC.o driver.o -L../camb -lcamb -L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_intel_lp64 -lguide -lpthread -DMATRIX_SINGLE -DNOWMAP -O2 -ip -W0 -WB -fpp2 -vec_report0 -I../camb
ld: skipping incompatible /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_lapack.so when searching for -lmkl_lapack
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: skipping incompatible /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a when searching for libmkl_intel_lp64.a
ld: cannot find libmkl_intel_lp64.a
make: *** [cosmomc] Error 1
Thanks a lot for all your help, in particular I am grateful to you for pointing out the 2 articles to me. However this still fails to compile....
I get the following message (for both the options that you suggested).....
ifort -o ../cosmomc utils.o Matrix_utils.o settings.o cmbtypes.o Planck_like.o cmbdata.o WeakLen.o mpk.o supernovae.o SDSSLy-a-v3.o CMB_Cls_simple.o paramdef.o propose.o params_CMB.o calclike.o conjgrad_wrapper.o EstCovmat.o postprocess.o MCMC.o driver.o -L../camb -lcamb -L/usr/local/intel/mkl/10.0.4.023/lib/64 -lmkl_lapack -lmkl_intel_lp64 -lguide -lpthread -DMATRIX_SINGLE -DNOWMAP -O2 -ip -W0 -WB -fpp2 -vec_report0 -I../camb
ld: skipping incompatible /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_lapack.so when searching for -lmkl_lapack
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a(_DftiCreateDescriptorDM1_fortran_lp64.o): warning: sh_link not set for section `.IA_64.unwind'
ld: skipping incompatible /usr/local/intel/mkl/10.0.4.023/lib/64/libmkl_intel_lp64.a when searching for libmkl_intel_lp64.a
ld: cannot find libmkl_intel_lp64.a
make: *** [cosmomc] Error 1
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help reqd with cosmomc
Hi Satej,
no problem. It's kind of tricky to get things right the first time :) Two more suggestions:
1.) Did you run the shell-script that comes with the Intel mkl?
and even more importantly:
2.) On what kind of processor and operating system (i.e. 32bit version of your distro or 64bit version?) are you compiling? Is it 64bit or 32bit?
Pascal
no problem. It's kind of tricky to get things right the first time :) Two more suggestions:
1.) Did you run the shell-script that comes with the Intel mkl?
and even more importantly:
2.) On what kind of processor and operating system (i.e. 32bit version of your distro or 64bit version?) are you compiling? Is it 64bit or 32bit?
Pascal
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help reqd with cosmomc
It is a Xeon (8 core) processor and I have ubuntu (8.04) 64 bit version installed on it. I realize that probably I should be referring to em64t in place of 64 for Xeon processor.
So I tried to redo the whole procedure for the em64t
I get the following output.... (with lmkl_intel_thread)
ifort -o ../cosmomc utils.o Matrix_utils.o settings.o cmbtypes.o Planck_like.o cmbdata.o WeakLen.o mpk.o supernovae.o SDSSLy-a-v3.o CMB_Cls_simple.o paramdef.o propose.o params_CMB.o calclike.o conjgrad_wrapper.o EstCovmat.o postprocess.o MCMC.o driver.o -L../camb -lcamb -L/usr/local/intel/mkl/10.0.4.023/lib/em64t -lmkl_lapack -lmkl_intel_lp64 -lguide -lmkl_intel_thread -DMATRIX_SINGLE -DNOWMAP -O2 -ip -W0 -WB -fpp2 -vec_report0 -I../camb
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_spblas_lp64_mkl_dcoosv'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `__mkl_cfg_file_readed_extern'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_lsame'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `xerbla_'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_spblas_lp64_mkl_dcsrsv'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `mkl_serv_load_lapack_dll'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_deallocate'
make: *** [cosmomc] Error 1
(only some of the many lines are mentioned here)
and following output with lpthread ....
ifort -o ../cosmomc utils.o Matrix_utils.o settings.o cmbtypes.o Planck_like.o cmbdata.o WeakLen.o mpk.o supernovae.o SDSSLy-a-v3.o CMB_Cls_simple.o paramdef.o propose.o params_CMB.o calclike.o conjgrad_wrapper.o EstCovmat.o postprocess.o MCMC.o driver.o -L../camb -lcamb -L/usr/local/intel/mkl/10.0.4.023/lib/em64t -lmkl_lapack -lmkl_intel_lp64 -lguide -lpthread -DMATRIX_SINGLE -DNOWMAP -O2 -ip -W0 -WB -fpp2 -vec_report0 -I../camb
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_dft_xcforward'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_spblas_lp64_mkl_dcoosv'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_lapack_cpptrs'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_lapack_claeh2'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_pde_tt_d_commit_trig_transform'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_lapack_cgbtrf'
make: *** [cosmomc] Error 1
On unpacking the MKL tar file, I ran install.sh
I then added the following to my .bashrc (in both root as well as user A/c) .....
source /usr/local/intel/fce/10.1.018/bin/ifortvars.sh
/usr/local/intel/mkl/10.0.4.023/tools/environment/mklvarsem64t.sh
I also built the lapack and blas libraries using ....
make PLAT=lnx32e lib
So I tried to redo the whole procedure for the em64t
I get the following output.... (with lmkl_intel_thread)
ifort -o ../cosmomc utils.o Matrix_utils.o settings.o cmbtypes.o Planck_like.o cmbdata.o WeakLen.o mpk.o supernovae.o SDSSLy-a-v3.o CMB_Cls_simple.o paramdef.o propose.o params_CMB.o calclike.o conjgrad_wrapper.o EstCovmat.o postprocess.o MCMC.o driver.o -L../camb -lcamb -L/usr/local/intel/mkl/10.0.4.023/lib/em64t -lmkl_lapack -lmkl_intel_lp64 -lguide -lmkl_intel_thread -DMATRIX_SINGLE -DNOWMAP -O2 -ip -W0 -WB -fpp2 -vec_report0 -I../camb
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_spblas_lp64_mkl_dcoosv'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `__mkl_cfg_file_readed_extern'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_lsame'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `xerbla_'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_spblas_lp64_mkl_dcsrsv'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `mkl_serv_load_lapack_dll'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_deallocate'
make: *** [cosmomc] Error 1
(only some of the many lines are mentioned here)
and following output with lpthread ....
ifort -o ../cosmomc utils.o Matrix_utils.o settings.o cmbtypes.o Planck_like.o cmbdata.o WeakLen.o mpk.o supernovae.o SDSSLy-a-v3.o CMB_Cls_simple.o paramdef.o propose.o params_CMB.o calclike.o conjgrad_wrapper.o EstCovmat.o postprocess.o MCMC.o driver.o -L../camb -lcamb -L/usr/local/intel/mkl/10.0.4.023/lib/em64t -lmkl_lapack -lmkl_intel_lp64 -lguide -lpthread -DMATRIX_SINGLE -DNOWMAP -O2 -ip -W0 -WB -fpp2 -vec_report0 -I../camb
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_dft_xcforward'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_spblas_lp64_mkl_dcoosv'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_lapack_cpptrs'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_lapack_claeh2'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_lp64.so: undefined reference to `mkl_pde_tt_d_commit_trig_transform'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_lapack_cgbtrf'
make: *** [cosmomc] Error 1
On unpacking the MKL tar file, I ran install.sh
I then added the following to my .bashrc (in both root as well as user A/c) .....
source /usr/local/intel/fce/10.1.018/bin/ifortvars.sh
/usr/local/intel/mkl/10.0.4.023/tools/environment/mklvarsem64t.sh
I also built the lapack and blas libraries using ....
make PLAT=lnx32e lib
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help reqd with cosmomc
Hi Satej,
it looks like the linking procedure for the Intel MKL changed from MKL 9.x to 10.x. Take a look at page 47 of the Intel MKL Handbook
http://softwarecommunity.intel.com/isn/ ... 347460.pdf
which explains the changes and gives some examples how to link.
Pascal
it looks like the linking procedure for the Intel MKL changed from MKL 9.x to 10.x. Take a look at page 47 of the Intel MKL Handbook
http://softwarecommunity.intel.com/isn/ ... 347460.pdf
which explains the changes and gives some examples how to link.
Pascal
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help reqd with cosmomc
Hi Pascal,
Sorry to bother you once more.
I tried
&
....however both give errors like .....
__tmp_ssytd3_omp.f:(.text+0x212a): undefined reference to `__kmpc_serialized_parallel'
__tmp_ssytd3_omp.f:(.text+0x21b3): undefined reference to `__kmpc_end_serialized_parallel'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_load_fun'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_load_dll'
make: *** [cosmomc] Error 1
Could there be an incompatibility with version 10 of MKL? I downloaded ver 9.0 however I cant get the installer running as Intel provides SN only for the latest version, i.e. version 10 & this SN does not work with ver 9.0
Sorry to bother you once more.
I tried
Code: Select all
LAPACKL = -L/usr/local/intel/mkl/10.0.4.023/lib/em64t -lmkl_lapack -lmkl_em64t
Code: Select all
LAPACKL = -L/usr/local/intel/mkl/10.0.4.023/lib/em64t -lmkl_intel_lp64 -lmkl_intel_thread -libmkl_core
__tmp_ssytd3_omp.f:(.text+0x212a): undefined reference to `__kmpc_serialized_parallel'
__tmp_ssytd3_omp.f:(.text+0x21b3): undefined reference to `__kmpc_end_serialized_parallel'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_load_fun'
/usr/local/intel/mkl/10.0.4.023/lib/em64t/libmkl_lapack.so: undefined reference to `mkl_serv_load_dll'
make: *** [cosmomc] Error 1
Could there be an incompatibility with version 10 of MKL? I downloaded ver 9.0 however I cant get the installer running as Intel provides SN only for the latest version, i.e. version 10 & this SN does not work with ver 9.0