I don't know what is the problem, I do believe it has something to do with the "checking for RTLD_DEFAULT in dl : no" output. But I couldn't fix it.
Please help!
I install clik on a cluster, with success:
Code: Select all
$ ./waf configure --install_all_deps --lapack_install
Code: Select all
Setting top to : /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1
Setting out to : /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/build
Checking for program 'gcc, cc' : /bin/gcc
Checking for program 'ar' : /bin/ar
Check gcc version : 8.4.1
Compile a test code with gcc : yes
Setting architecture flag to : ['-m64']
Checking for program 'ifort' : not found
ifort not found, defaulting to gfortran (cause: 'Could not find the program ['ifort']
(complete log in /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/build/config.log)')
Checking for program 'gfortran, g77' : /bin/gfortran
Checking for program 'ar' : /bin/ar
Check gfortran version : not found, let's hope for the best...
Compile a test code with gfortran : yes
retrieve gfortran link line : ok
gfortran link line : -L/gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1 -lgfortran -lgomp
Setting install root to : /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1
Setting install bin directory to : /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin
Setting install lib directory to : /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib
Setting install include directory to : /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/include
Checking for program 'python' : /gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/bin/python
Checking for python version : 3.9.9
python-config : /gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/bin/python3.9-config
Asking python-config for pyembed '--cflags --libs --ldflags --embed' flags : yes
Testing pyembed configuration : yes
Checking for library dl : yes
checking for RTLD_DEFAULT in dl : no
compile with debug option : OFF
Checking for program 'pmc-config' : not found
Checking for library pmc : not found
Install 'lapack-3.3.1.tgz'
download from http://www.netlib.org/lapack/lapack-3.3.1.tgz
untar lapack-3.3.1.tgz
build blas
build lapack
Checking for library ['lapack_clik', 'blas_clik'] : yes
checking for function 'dposv' : yes
checking for function 'dtrsv' : yes
checking for function 'dpotrf' : yes
checking for function 'dpotrs' : yes
checking for function 'dpotri' : yes
checking for function 'dtrtri' : yes
checking for function 'dtrmm' : yes
checking for function 'dtrmv' : yes
checking for function 'dgeqrf' : yes
checking for function 'dormqr' : yes
checking for function 'dsyev' : yes
checking for function 'dgesvd' : yes
checking for function 'dsymv' : yes
checking for function 'dgemv' : yes
checking for function 'dgemm' : yes
checking for function 'dsyrk' : yes
checking for function 'dsyr2k' : yes
checking for function 'daxpy' : yes
checking for function 'dtrsm' : yes
checking for function 'dsymm' : yes
checking for function 'dsyr' : yes
checking for function 'ddot' : yes
checking for function 'dsyevd' : yes
checking for function 'dlamch' : yes
checking for function 'dsyevr' : yes
Checking for library ['cfitsio'] : yes
checking for function 'fits_init_cfitsio' : yes
Python version allows for automatic install : yes (3.9.9)
Checking for program 'python' : /gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/bin/python
Checking python module 'numpy' : ok
Checking python module 'astropy' : ok
Checking for program 'python' : /gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/bin/python
Checking python module 'cython' : ok
Checking python module 'cython' : ok
Checking cython version (>0.28) : 0.29.26
Checking for program 'cython' : /gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/bin/cython
Add plugin : 'rel2015' : ok
*----------------------------------------------------*
| |
| Configure step ok. |
| |
| run './waf install' now ! |
| |
*----------------------------------------------------*
'configure' finished successfully (2m9.872s)
Code: Select all
$ ./waf install
Code: Select all
Waf: Entering directory `/gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/build'
add plik/component_plugin/rel2015/fg2015.c
add plik/component_plugin/rel2015/corrnoise.c
add plik/component_plugin/rel2015/leakage.c
[ 1/141] Compiling src/python/clik/lkl.pyx
[ 2/141] Compiling src/python/clik/lkl_lensing.pyx
[ 3/141] Compiling src/python/clik/parametric.pyx
[ 4/141] Compiling src/plik/component_plugin/rel2015/rel2015.pyx
[ 5/141] Processing src/lowlike/Planck_options.F90
[ 6/141] Processing src/actspt/Highell_options.F90
[ 7/141] Processing src/actspt/Highell_subroutines.F90
[ 8/141] Processing src/gibbs/comm_gauss_br_mod.f90
[ 9/141] Processing src/gibbs/comm_gauss_br_mod_v3.f90
[ 10/141] Processing src/gibbs/comm_lowl_mod_dist.f90
[ 11/141] Processing src/gibbs/comm_br_mod.f90
[ 12/141] Processing src/cmbonly/plik_cmbonly.f90
[ 13/141] Processing src/camspec/CAMspec.f90
[ 14/141] Processing src/camspec/temp_like.f90
[ 15/141] Processing src/camspec/temp_like_v3.f90
[ 16/141] Processing src/bflike/healpix_types.f90
[ 17/141] Compiling src/lowlike/read_archive_map.f90
[ 18/141] Compiling src/lowlike/read_fits.f90
[ 19/141] Processing src/lowlike/br_mod_dist.f90
[ 20/141] Processing src/clik.F90
[ 21/141] Compiling build/src/python/clik/__pycache__/parobject.cpython-39.pyo
[ 22/141] Compiling build/src/python/clik/__pycache__/smicahlp.cpython-39.pyo
[ 23/141] Compiling build/src/python/clik/__pycache__/hpy.cpython-39.pyo
[ 24/141] Compiling build/src/python/clik/__pycache__/smicahlp.cpython-39.pyc
[ 25/141] Compiling build/src/python/clik/__pycache__/hpy.cpython-39.pyc
[ 26/141] Compiling build/src/python/clik/__pycache__/cldf.cpython-39.pyc
[ 27/141] Compiling build/src/python/clik/__pycache__/__init__.cpython-39.pyo
[ 28/141] Compiling build/src/python/clik/__pycache__/miniparse.cpython-39.pyc
[ 29/141] Compiling build/src/python/clik/__pycache__/__init__.cpython-39.pyc
[ 30/141] Compiling build/src/python/clik/__pycache__/cldf.cpython-39.pyo
[ 31/141] Compiling build/src/python/clik/__pycache__/parobject.cpython-39.pyc
[ 32/141] Compiling build/src/python/clik/__pycache__/miniparse.cpython-39.pyo
[ 33/141] Compiling src/python/tools/clik_print.py
[ 34/141] Compiling src/python/tools/clik_explore_1d.py
[ 35/141] Compiling src/python/tools/clik_get_selfcheck.py
[ 36/141] Compiling src/python/tools/clik_example_py.py
[ 37/141] Compiling src/python/tools/prepare_wmap.py
[ 38/141] Compiling src/python/tools/clik_change_lrange_bychannel_pol.py
[ 39/141] Compiling src/python/tools/clik_change_lrange.py
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/include/clik_lensing.h (from src/clik_lensing.h)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/hpy.py (from src/python/clik/hpy.py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/smicahlp.py (from src/python/clik/smicahlp.py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/cldf.py (from src/python/clik/cldf.py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/parobject.py (from src/python/clik/parobject.py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/miniparse.py (from src/python/clik/miniparse.py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__init__.py (from src/python/clik/__init__.py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/include/clik.h (from src/clik.h)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/include/errorlist.h (from src/minipmc/errorlist.h)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_print (from build/src/python/clik_print)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_explore_1d (from build/src/python/clik_explore_1d)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_change_lrange_bychannel_pol (from build/src/python/clik_change_lrange_bychannel_pol)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/tsz_143_eps0.50.dat (from src/plik/component_plugin/rel2015/tsz_143_eps0.50.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_get_selfcheck (from build/src/python/clik_get_selfcheck)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/prepare_wmap (from build/src/python/prepare_wmap)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_change_lrange (from build/src/python/clik_change_lrange)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_example_py (from build/src/python/clik_example_py)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/sz_x_cib_template.dat (from src/plik/component_plugin/rel2015/sz_x_cib_template.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/ksz_fromcamspec.dat (from src/plik/component_plugin/rel2015/ksz_fromcamspec.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/cib_1h_2h_100_353_Jsr-1_PS_2014_09.dat (from src/plik/component_plugin/rel2015/cib_1h_2h_100_353_Jsr-1_PS_2014_09.dat)
[ 55/141] Processing src/lowlike/Planck_teeebb_pixlike.F90
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/sky_template_v15_F100_143_217_353.dat (from src/plik/component_plugin/rel2015/sky_template_v15_F100_143_217_353.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/cnoise_F100_143_217_353_v17.dat (from src/plik/component_plugin/rel2015/cnoise_F100_143_217_353_v17.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/cleak_eh_rd12rc3_v1.dat (from src/plik/component_plugin/rel2015/cleak_eh_rd12rc3_v1.dat)
[ 56/141] Processing src/bflike/long_intrinsic_smw.f90
[ 57/141] Processing src/actspt/Foregrounds_loading.F90
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/cnoise_e2e_v2.dat (from src/plik/component_plugin/rel2015/cnoise_e2e_v2.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/share/clik/rel2015/sbpx_tmpl_v4_hm.dat (from src/plik/component_plugin/rel2015/sbpx_tmpl_v4_hm.dat)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/cldf.cpython-39.pyo (from build/src/python/clik/__pycache__/cldf.cpython-39.pyo)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/__init__.cpython-39.pyc (from build/src/python/clik/__pycache__/__init__.cpython-39.pyc)
[ 60/141] Processing src/plik/clik_plik.f90
[ 61/141] Compiling src/clik_example_f90.f90
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/parobject.cpython-39.pyo (from build/src/python/clik/__pycache__/parobject.cpython-39.pyo)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/__init__.cpython-39.pyo (from build/src/python/clik/__pycache__/__init__.cpython-39.pyo)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/hpy.cpython-39.pyc (from build/src/python/clik/__pycache__/hpy.cpython-39.pyc)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/miniparse.cpython-39.pyc (from build/src/python/clik/__pycache__/miniparse.cpython-39.pyc)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/smicahlp.cpython-39.pyc (from build/src/python/clik/__pycache__/smicahlp.cpython-39.pyc)
[ 67/141] Processing src/cmbonly/clik_cmbonly.f90
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/hpy.cpython-39.pyo (from build/src/python/clik/__pycache__/hpy.cpython-39.pyo)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/miniparse.cpython-39.pyo (from build/src/python/clik/__pycache__/miniparse.cpython-39.pyo)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/cldf.cpython-39.pyc (from build/src/python/clik/__pycache__/cldf.cpython-39.pyc)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/parobject.cpython-39.pyc (from build/src/python/clik/__pycache__/parobject.cpython-39.pyc)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/__pycache__/smicahlp.cpython-39.pyo (from build/src/python/clik/__pycache__/smicahlp.cpython-39.pyo)
[ 73/141] Processing src/bflike/fitstools_smw.f90
[ 74/141] Processing src/actspt/ACT_south_likelihood.F90
[ 75/141] Processing src/actspt/SPT_keisler_likelihood.F90
[ 76/141] Processing src/actspt/ACT_equa_likelihood.F90
[ 77/141] Processing src/actspt/SPT_reichardt_likelihood.F90
[ 78/141] Processing src/lowlike/Planck_likelihood.F90
[ 79/141] Processing src/camspec/clik_CAMspec.F90
[ 80/141] Processing src/gibbs/clik_gibbs.f90
[ 81/141] Processing src/lowlike/clik_lowlike.f90
[ 82/141] Processing src/actspt/Highell_likelihood.F90
[ 83/141] Processing src/actspt/clik_actspt.f90
[ 84/141] Processing src/bflike/bflike_QUonly.f90
[ 85/141] Processing src/bflike/bflike.f90
[ 86/141] Processing src/bflike/bflike_smw.f90
/gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/plik/component_plugin/rel2015/rel2015.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl.pyx:50:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl.pyx:50:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl.pyx:208:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl.pyx:208:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
/gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl_lensing.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl_lensing.pyx:51:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl_lensing.pyx:51:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl_lensing.pyx:155:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/lkl_lensing.pyx:155:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
/gpfs0/elyk/users/talabadi/anaconda3/envs/py39forge/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/src/python/clik/clik.parametric.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
[ 87/141] Compiling src/plik/component_plugin/rel2015/corrnoise.c
[ 88/141] Compiling src/lowlike/clik_lowlike.c
[ 89/141] Compiling src/lklbs.c
[ 90/141] Compiling src/cmbonly/clik_cmbonly.c
[ 91/141] Compiling src/camspec/clik_CAMspec.c
[ 92/141] Compiling src/plik/component_plugin/rel2015/fg2015.c
[ 93/141] Compiling src/plik/smica.c
[ 94/141] Compiling src/plik/clik_plik.c
[ 95/141] Compiling src/plik/clik_parametric_addon.c
[ 96/141] Compiling src/plik/clik_parametric.c
[ 97/141] Compiling src/simall/clik_simall.c
[ 98/141] Compiling src/clik_dic.c
[ 99/141] Compiling src/lenslike/plenslike/wignerd.c
[100/141] Compiling src/bflike/clik_bflike.c
[101/141] Compiling src/lenslike/plenslike/qest.c
[102/141] Compiling src/minipmc/distribution.c
[103/141] Compiling src/lenslike/plenslike/plenslike_dat_full.c
[104/141] Compiling src/minipmc/io.c
[105/141] Compiling src/minipmc/errorlist.c
[106/141] Compiling src/lenslike/plenslike/plenslike_dat_qecl.c
[107/141] Compiling src/cldf/cfrd.c
[108/141] Compiling src/lenslike/plenslike/plenslike_dat_quad.c
[109/141] Compiling src/cldf/cldf.c
[110/141] Compiling src/lenslike/plenslike/plenslike_dat_mono.c
[111/141] Compiling src/plik/clik_hfipack.c
[112/141] Compiling src/plik/component_plugin/rel2015/leakage.c
[113/141] Compiling src/clik.c
[114/141] Compiling src/clik_helper.c
[115/141] Compiling src/gibbs/clik_gibbs.c
[116/141] Compiling src/actspt/clik_actspt.c
[117/141] Compiling src/lowly_common.c
[118/141] Compiling src/clik_lensing.c
[119/141] Compiling src/clik_fortran.c
[120/141] Compiling src/clik_example_c.c
[121/141] Compiling build/src/python/clik/lkl.pyx.c
[122/141] Compiling build/src/python/clik/lkl_lensing.pyx.c
[123/141] Compiling build/src/python/clik/parametric.pyx.c
[124/141] Compiling build/src/plik/component_plugin/rel2015/rel2015.pyx.c
[125/141] Processing src/bflike/clik_bflike.f90
[126/141] Linking build/src/libclik.so
[127/141] Linking build/src/libclik_f90.so
[128/141] Linking build/src/clik_example_C
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/libclik.so (from build/src/libclik.so)
[130/141] Linking build/src/clik_example_f90
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/libclik_f90.so (from build/src/libclik_f90.so)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_example_C (from build/src/clik_example_C)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/bin/clik_example_f90 (from build/src/clik_example_f90)
In file included from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from src/python/clik/lkl.pyx.c:681:
../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
[134/141] Linking build/src/python/lkl.cpython-39-x86_64-linux-gnu.so
In file included from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from src/python/clik/lkl_lensing.pyx.c:681:
../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
[135/141] Linking build/src/python/lkl_lensing.cpython-39-x86_64-linux-gnu.so
[136/141] Linking build/src/python/rel2015.cpython-39-x86_64-linux-gnu.so
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/lkl.cpython-39-x86_64-linux-gnu.so (from build/src/python/lkl.cpython-39-x86_64-linux-gnu.so)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/lkl_lensing.cpython-39-x86_64-linux-gnu.so (from build/src/python/lkl_lensing.cpython-39-x86_64-linux-gnu.so)
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/rel2015.cpython-39-x86_64-linux-gnu.so (from build/src/python/rel2015.cpython-39-x86_64-linux-gnu.so)
In file included from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from ../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from src/python/clik/parametric.pyx.c:683:
../../../../../../../anaconda3/envs/py39forge/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
[140/141] Linking build/src/python/parametric.cpython-39-x86_64-linux-gnu.so
+ install /gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/lib/python/site-packages/clik/parametric.cpython-39-x86_64-linux-gnu.so (from build/src/python/parametric.cpython-39-x86_64-linux-gnu.so)
Waf: Leaving directory `/gpfs0/elyk/users/talabadi/codes/cobaya/code/planck/plc_3.0/plc-3.1/build'
*----------------------------------------------------*
| |
| Source clik_profile.sh (or clik_profile.csh) |
| to set the environment variables needed by clik |
| |
*----------------------------------------------------*
'install' finished successfully (4.891s)
Code: Select all
$ source bin/clik_profile.sh
Code: Select all
$ python
Python 3.9.9 | packaged by conda-forge | (main, Dec 20 2021, 02:41:03)
[GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import clik
Cannot use clik wrapper (cause = '/usr/lib64/libssh.so.4: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')
Cannot use clik_lensing wrapper (cause = '/usr/lib64/libssh.so.4: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')