CosmoCoffee

Posted: **December 15 2019**

On our cluster, I am trying to install Planck likelihood 2018 (plc3) which I intend to use with Montepython+CLASS. I am using a separate/fresh conda environment with python 2.7 (as suggested) and following the link given below:

https://github.com/brinckmann/montepython_public

However, I am facing issues with the Planck likelihood 2018 installation. The waf configuration command

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./waf configure --lapack_mkl=${MKLROOT} --install_all_deps --cfitsio_prefix=/usr/local/cfitsio/3270

gives the output saying that configuration was successful. But I am not sure because the output also says:

Asking python-config for pyembed '--cflags --libs --ldflags --embed' flags : not found , checking for RTLD_DEFAULT in dl : no, Checking for program 'pmc-config' : not found , Checking for library pmc : not found

Are these serious problems?
However, when I proceed to

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./waf install

I get the following error:

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collect2: error: ld returned 1 exit status

src/libclik.so: undefined reference to `curl_easy_perform'
src/libclik.so: undefined reference to `curl_easy_init'
src/libclik.so: undefined reference to `curl_easy_cleanup'
src/libclik.so: undefined reference to `curl_easy_setopt'
src/libclik.so: undefined reference to `curl_global_init'
src/libclik.so: undefined reference to `curl_global_cleanup'

Waf: Leaving directory `/caefs/user/satadru/MontePython/Planck2018/code/plc_3.0/plc-3.01/build'
Build failed
 -> task in 'clik_example_C' failed with exit status 1 (run with -v to display more information)
 -> task in 'clik_example_f90' failed with exit status 1 (run with -v to display more information)

I am not sure what are the issues. I tried installing many libraries, like libcurl, binutils, Liblapack etc using conda but nothing paid off. Please help me.
Thanks in advance.

Sincerely,
Satadru Bag

Posted: **May 11 2020**

I can't understand the installation procedure of the planck likelihood 2018. Actually where to write the said code. Before that what are the required installations and procedures to follow? plz suggest me . I have python 3.8.2, windows 10 and Fortran 4.0.

Posted: **May 13 2020**

Hi Ajit,

Apparently the Planck likelihood is not compatible with Windows. Maybe try some linux distro like Ubuntu?

Posted: **July 12 2020**

Hi Satadru,

I seem to have the exact same issue as you. I am trying to install the Planck 2018 likelihood on a cluster. I have tried various combinations of icc/gcc and ifort/gfortran with the same result. The configuration step returns "ok", however running `./waf install` then produces the error:

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[134/141] Linking build/src/clik_example_f90
+ install /lustre/dirac/home/dc-herg1/Documents/Projects/PlanckPrj/planck_2018/code/plc_3.0/plc-3.01/lib/libclik_f90.so (from build/src/libclik_f90.so)
+ install /lustre/dirac/home/dc-herg1/Documents/Projects/PlanckPrj/planck_2018/code/plc_3.0/plc-3.01/lib/python/site-packages/clik/parametric.cpython-36m-x86_64-linux-gnu.so (from build/src/python/parametric.cpython-36m-x86_64-linux-gnu.so)
/usr/bin/ld: skipping incompatible /lib/libpthread.so when searching for -lpthread
/usr/bin/ld: skipping incompatible /lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /lib/libdl.so when searching for -ldl
/usr/bin/ld: skipping incompatible /lib/libpthread.so when searching for -lpthread
/usr/bin/ld: skipping incompatible /lib/libgcc_s.so.1 when searching for libgcc_s.so.1
/usr/bin/ld: skipping incompatible /lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /lib/libgcc_s.so.1 when searching for libgcc_s.so.1
/cm/shared/apps/cfitsio/intel/3.450/lib/libcfitsio.so: undefined reference to `__svml_idiv8_l9'
/cm/shared/apps/cfitsio/intel/3.450/lib/libcfitsio.so: undefined reference to `__svml_idiv8_mask_l9'
/cm/shared/apps/cfitsio/intel/3.450/lib/libcfitsio.so: undefined reference to `__svml_idiv4_e9'
collect2: error: ld returned 1 exit status

/cm/shared/apps/cfitsio/intel/3.450/lib/libcfitsio.so.7: undefined reference to `__svml_idiv8_l9'
/cm/shared/apps/cfitsio/intel/3.450/lib/libcfitsio.so.7: undefined reference to `__svml_idiv8_mask_l9'
/cm/shared/apps/cfitsio/intel/3.450/lib/libcfitsio.so.7: undefined reference to `__svml_idiv4_e9'

Waf: Leaving directory `/lustre/dirac/home/dc-herg1/Documents/Projects/PlanckPrj/planck_2018/code/plc_3.0/plc-3.01/build'
Build failed
 -> task in 'clik_example_C' failed with exit status 1 (run with -v to display more information)
 -> task in 'clik_example_f90' failed with exit status 1 (run with -v to display more information)

Did you manage to resolve this somehow in the end, Satadru?
Does anybody else maybe have an incling what might be going wrong here?

Best,
Lukas

Posted: **October 25 2021**

I have exactly the same question when proceeding "/waf install"...("./ waf configure -- install_all_deps" went just well)
Wish somebody could propose some suggestions~

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[138/141] Linking build/src/clik_example_f90
+ install /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libclik_f90.so (from build/src/libclik_f90.so)
/usr/bin/ld: warning: libcurl.so.4, needed by /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so: undefined reference to `curl_easy_perform'
/usr/bin/ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so: undefined reference to `curl_easy_init'
/usr/bin/ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so: undefined reference to `curl_easy_cleanup'
/usr/bin/ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so: undefined reference to `curl_easy_setopt'
/usr/bin/ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so: undefined reference to `curl_global_init'
/usr/bin/ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so: undefined reference to `curl_global_cleanup'
collect2: error: ld returned 1 exit status

ld: warning: libcurl.so.4, needed by /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9, not found (try using -rpath or -rpath-link)
ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9: undefined reference to `curl_easy_perform'
ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9: undefined reference to `curl_easy_init'
ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9: undefined reference to `curl_easy_cleanup'
ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9: undefined reference to `curl_easy_setopt'
ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9: undefined reference to `curl_global_init'
ld: /home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/lib/libcfitsio.so.9: undefined reference to `curl_global_cleanup'

Waf: Leaving directory `/home/jyl/programs/COM_Likelihood_Code-v3.0_R3.10/code/plc_3.0/plc-3.1/build'
Build failed
 -> task in 'clik_example_C' failed with exit status 1 (run with -v to display more information)
 -> task in 'clik_example_f90' failed with exit status 1 (run with -v to display more information)

CosmoCoffee

Problem in installing Planck likelihood 2018

Problem in installing Planck likelihood 2018

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