CosmoMC: Planck 2018/2015 Likelihoods

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Thomas Clarke
Posts: 5
Joined: November 04 2016
Affiliation: University of Nottingham

CosmoMC: Planck 2018/2015 Likelihoods

Post by Thomas Clarke » December 02 2019

I've installed the July 2019 version of CosmoMC to use the Planck 2018 likelihoods. I followed the instructions given on the CosmoMC pages and it seems to be running the test files correctly. However when I run 'make' I get the following warnings;

Code: Select all

ipo: warning #11021: unresolved clik_lensing_get_extra_parameter_names
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_get_lmaxs
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_data_
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_version
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_cleanup
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_extra_parameter_names
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_compute
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_try_lensing
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_has_cl
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_cleanup
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_get_lmax
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_init
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved purgeError
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_cltt_fid
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved _isError
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_clcmb_fid
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_init
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_clpp_fid
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_cal_beam_
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_fg_
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_compute
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_vecsize_
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_lmax
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved printError
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/plc-2.0/lib/libclik_f90.so
ipo: warning #11021: unresolved __xmlGenericError
        Referenced in /home/ppxtjc/Documents/cosmomc/CosmoMC_2019/mpi-install/lib/libmpi.so
make[1]: Leaving directory `/home/ppxtjc/Documents/cosmomc/CosmoMC_2019/Planck_2019/CosmoMC/source'
The fact that this is referring to plc-2.0 suggests that Planck 2015 is the problem but I think I linked to that as I did previously. Any ideas what is causing this?

Antony Lewis
Posts: 1688
Joined: September 23 2004
Affiliation: University of Sussex
Contact:

Re: CosmoMC: Planck 2018/2015 Likelihoods

Post by Antony Lewis » December 02 2019

I would use the latest version of the clik likelihood code (which can still load old 2015 data files).

akhil antony
Posts: 1
Joined: March 29 2020
Affiliation: The Institute of Mathematical Sciences

Re: CosmoMC: Planck 2018/2015 Likelihoods

Post by akhil antony » January 23 2021

I got the same set of errors while compiling cosmomc with plc 3.0 also.

ipo: warning #11021: unresolved clik_lensing_get_extra_parameter_names
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_get_lmaxs
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_data_
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_version
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_cleanup
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_extra_parameter_names
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_compute
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_try_lensing
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_has_cl
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_cleanup
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_get_lmax
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_init
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved purgeError
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_cltt_fid
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved _isError
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_clcmb_fid
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_init
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_clpp_fid
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_cal_beam_
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_fg_
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_lensing_compute
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved fortran_plik_get_vecsize_
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved clik_get_lmax
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
ipo: warning #11021: unresolved printError
Referenced in /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/lib/libclik_f90.so
make[1]: Leaving directory `/storage/gpfs_maestro_home/hpc/akhil/epsilon/source

===================================

Also I was getting some warning while installing plc.

warning: /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/src/python/clik/lkl_lensing.pyx:51:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
/home/HPC/akhil/.local/lib/python3.6/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /storage/gpfs_maestro_home/hpc/akhil/plc_3.0/plc-3.01/src/python/clik/clik.parametric.pxd
tree = Parsing.p_module(s, pxd, full_module_name)

/home/HPC/akhil/.local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
#warning "Using deprecated NumPy API, disable it with “ \

Will this affect the cosmomc runs? Is there any way to fix this?

Antony Lewis
Posts: 1688
Joined: September 23 2004
Affiliation: University of Sussex
Contact:

Re: CosmoMC: Planck 2018/2015 Likelihoods

Post by Antony Lewis » January 23 2021

Warnings are usually harmless

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