Updated clik for 2015 Planck

Use of Cobaya. camb, CLASS, cosmomc, compilers, etc.
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Antony Lewis
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Joined: September 23 2004
Affiliation: University of Sussex
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Updated clik for 2015 Planck

Post by Antony Lewis » March 02 2019

In case anyone has problems building Planck 2015 likelihoods with recent compilers or using with python 3, Karim has kindly provided an updated code release, available from here until the updated code is made available along with new likelihoods in the 2018 release.

He Jia
Posts: 5
Joined: March 19 2019
Affiliation: Princeton University
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Re: Updated clik for 2015 Planck

Post by He Jia » March 19 2019

Hi, I just tried to install this with Anaconda on Linux, and here's some experience in case someone else encounters the same issue.

On my side it seems that ifort is not compatible with glibc, so I switched to gfortran. And in order to use conda's mkl, I modified waf_tools/any_lapack.py as follows:

Code: Select all

(Line 83) cmdlist["ars"] = " ".join([osp.join(mkl_options[tag][0]%(ctx.options.lapack_mkl),"lib%s.so"%v.strip()) for v in mkl_options[tag][1].split("-l") if v.strip() and v.strip()[:3]=="mkl"])          # change .a library to .so

(Line 293) "linux_10.3_64" :("%s/lib/"," -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core  -lgomp -lpthread -lm"),
Then I could successfully install it with --lapack_mkl=$CONDA_PREFIX .

Minh Nguyen
Posts: 11
Joined: March 21 2016
Affiliation: Leinweber Center for Theoretical Physics, University of Michigan
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Re: Updated clik for 2015 Planck

Post by Minh Nguyen » April 16 2022

Hi Antony, for the reason of testing, I need the Planck 2015 likelihood installed. I'm using the compressed file you provided but having issue with pyembed, although I do not have the same issue with the Planck 2018 likelihood installation. I quote below the relevant part of the config.log file

Code: Select all

Asking python-config for pyembed '--cflags --libs --ldflags' flags
['/sw/arcts/centos7/python3.8-anaconda/2021.05/bin/python3.8-config', '--cflags', '--libs', '--ldflags']
out: -I/sw/arcts/centos7/python3.8-anaconda/2021.05/include/python3.8 -I/sw/arcts/centos7/python3.8-anaconda/2021.05/include/python3.8  -Wno-unused-result -Wsign-compare -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -ffunction-sections -pipe -isystem /sw/arcts/centos7/python3.8-anaconda/2021.05/include -fdebug-prefix-map=/tmp/build/80754af9/python_1618343417471/work=/usr/local/src/conda/python-3.8.8 -fdebug-prefix-map=/sw/arcts/centos7/python3.8-anaconda/2021.05=/usr/local/src/conda-prefix -fno-semantic-interposition -fuse-linker-plugin -ffat-lto-objects -flto-partition=none -flto -DNDEBUG -fwrapv -O3 -Wall
 -lcrypt -lpthread -ldl  -lutil -lrt -lm -lm 
-L/sw/arcts/centos7/python3.8-anaconda/2021.05/lib/python3.8/config-3.8-x86_64-linux-gnu -L/sw/arcts/centos7/python3.8-anaconda/2021.05/lib  -lcrypt -lpthread -ldl  -lutil -lrt -lm -lm 

Unhandled flag '-Wno-unused-result'
Unhandled flag '-Wsign-compare'
Unhandled flag '-pipe'
Unhandled flag '-Wall'
yes
------------------------------------------------------------------
Testing pyembed configuration
==>

#include <Python.h>
#ifdef __cplusplus
extern "C" {
#endif
	void Py_Initialize(void);
	void Py_Finalize(void);
#ifdef __cplusplus
}
#endif
int main(int argc, char **argv)
{
   (void)argc; (void)argv;
   Py_Initialize();
   Py_Finalize();
   return 0;
}

<==
[1/2] Compiling [32mbuild/.conf_check_1280730ce3216dfbee6fb462ae83c808/test.c[0m

['/sw/arcts/centos7/gcc/9.2.0/bin/gcc', '-march=nocona', '-mtune=haswell', '-ftree-vectorize', '-fPIC', '-fstack-protector-strong', '-fno-plt', '-O3', '-ffunction-sections', '-isystem', '/sw/arcts/centos7/python3.8-anaconda/2021.05/include', '-fdebug-prefix-map=/tmp/build/80754af9/python_1618343417471/work=/usr/local/src/conda/python-3.8.8', '-fdebug-prefix-map=/sw/arcts/centos7/python3.8-anaconda/2021.05=/usr/local/src/conda-prefix', '-fno-semantic-interposition', '-fuse-linker-plugin', '-ffat-lto-objects', '-flto-partition=none', '-flto', '-fwrapv', '-O3', '-I/sw/arcts/centos7/python3.8-anaconda/2021.05/include/python3.8', '-DPYTHONDIR="/nfs/turbo/lsa-nguyenmn/cosmo_analysis/cobaya_intel/code/planck/code/plc-2.1_py3/lib/python3.8/site-packages"', '-DPYTHONARCHDIR="/nfs/turbo/lsa-nguyenmn/cosmo_analysis/cobaya_intel/code/planck/code/plc-2.1_py3/lib/python3.8/site-packages"', '-DNDEBUG', '../test.c', '-c', '-o/nfs/turbo/lsa-nguyenmn/cosmo_analysis/cobaya_intel/code/planck/code/plc-2.1_py3/build/.conf_check_1280730ce3216dfbee6fb462ae83c808/testbuild/test.c.1.o']
[2/2] Linking [33mbuild/.conf_check_1280730ce3216dfbee6fb462ae83c808/testbuild/testprog[0m

['/sw/arcts/centos7/gcc/9.2.0/bin/gcc', '-m64', '-fPIC', 'test.c.1.o', '-o/nfs/turbo/lsa-nguyenmn/cosmo_analysis/cobaya_intel/code/planck/code/plc-2.1_py3/build/.conf_check_1280730ce3216dfbee6fb462ae83c808/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic', '-L/sw/arcts/centos7/python3.8-anaconda/2021.05/lib', '-L/sw/arcts/centos7/python3.8-anaconda/2021.05/lib/python3.8/config-3.8-x86_64-linux-gnu', '-lm', '-ldl', '-lutil', '-lpthread', '-lcrypt', '-lpthread', '-ldl', '-lutil', '-lrt', '-lm', '-lm', '-lcrypt', '-lpthread', '-ldl', '-lutil', '-lrt', '-lm', '-lm']
err: /tmp/testprog.2aiYR0.ltrans0.ltrans.o: In function `main':
<artificial>:(.text.startup+0x6): undefined reference to `Py_Initialize'
<artificial>:(.text.startup+0xc): undefined reference to `Py_Finalize'
collect2: error: ld returned 1 exit status

Antony Lewis
Posts: 1842
Joined: September 23 2004
Affiliation: University of Sussex
Contact:

Re: Updated clik for 2015 Planck

Post by Antony Lewis » April 17 2022

I think you should be able to use the 2018 likelihood with old 2015 clik files.

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