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covariance matrix and proposal matrix

Posted: June 13 2008
by Feng-Quan Wu
Is the covariance matrix(outputting file of CosmoMC, eg.
test.covmat) the invertion of Fisher matrix at the best fitting
point?

I'm confused, because the params.ini says one "can use covariance
matrix for proposal density", but I think the covariance matrix
derived from Fisher matrix is very different from the proposal
matrix in the MCMC technology.

Re: covariance matrix and proposal matrix

Posted: June 13 2008
by Antony Lewis
It is the covariance matrix of the samples.

If supplied for an MCMC run it is used to construct a decent proposal matrix that knows about parameter scales and correlations.

covariance matrix and proposal matrix

Posted: June 14 2008
by Feng-Quan Wu
I see, thank you very much!