In case this is useful to anyone, this is how I compile cosmomc at Bristol Astrophysics Group. Our machines mostly run Scientific Linux 6 (a clone of RedHat EL6) and we have the ifort 13 compiler on an academic license, which I just upgraded to version 14.0.1 last week.
cd /data/cygnus1/nina/rhys_cosmomc_nov2013/
tar xzvf ~/Downloads/cosmomc.tat.gz
# Initialise compiler
source /usr/local/intel/composer_xe_2013_sp1.1.106/bin/compilervars.csh intel64
setenv INTEL_LICENSE_FILE /usr/local/intel/licenses/<insert your license file here>
cd source/
cp Makefile Makefile.orig
emacs -nw Makefile
change all references to -lmpi to -lmkl_gf_ilp64 -lmkl_core -lmkl_intel_thread
cd ..
env FC=imfort MPICH_F90=ifort make
and it builds cosmomc.
I hope this may be usefule to someone, please also let me know if there are any problems with what I do!
Regards,
Rhys
My cosmomc compiling recipe
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Rhys Morris
- Posts: 1
- Joined: November 05 2013
- Affiliation: University of Bristol
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Gansukh Tumurtushaa
- Posts: 34
- Joined: October 05 2013
- Affiliation: Sogang univ.
My cosmomc compiling recipe
Hello?
Could you explain more details on what reason we do need to change the lmpi as a new form/line?
I mean I had a "can not find lmpi"problem when I run make clean and then make. After I did change as you suggested, the problem is solved. So that I would like to know the meaning of the change.
Could you, please, explain more detail?
Thank you.
-Gansukh
Could you explain more details on what reason we do need to change the lmpi as a new form/line?
I mean I had a "can not find lmpi"problem when I run make clean and then make. After I did change as you suggested, the problem is solved. So that I would like to know the meaning of the change.
Could you, please, explain more detail?
Thank you.
-Gansukh