CosmoCoffee Forum Index CosmoCoffee

 
 FAQFAQ   SearchSearch  MemberlistSmartFeed   MemberlistMemberlist    RegisterRegister 
   ProfileProfile   Log inLog in 
Arxiv New Filter | Bookmarks & clubs | Arxiv ref/author:

[cosmoMC] - minor problem with the current master branch
 
Post new topic   Reply to topic    CosmoCoffee Forum Index -> Computers and software
View previous topic :: View next topic  
Author Message
Ira *Wolfson



Joined: 24 Jan 2013
Posts: 54
Affiliation: BGU

PostPosted: June 26 2017  Reply with quote

Hi,

I have encountered a minor problem with the master branch code.

I am running cosmomc with the attached .ini file.

[url=http://cosmocoffee.info/files/Ira_*Wolfson/freeNS.ini]freeNS.ini[/url]

I get the following error:
Code:

forrtl: severe (173): A pointer passed to DEALLOCATE points to an object that cannot be deallocated


The reason this is minor, is that I can still run it again (having set checkpoint=T) and the run will converge eventually.

However it is worth taking a look at...

– Ira
Back to top
View user's profile [ Hidden ] Visit poster's website
Ira *Wolfson



Joined: 24 Jan 2013
Posts: 54
Affiliation: BGU

PostPosted: June 26 2017  Reply with quote

Spoke to soon...

The fault persists.
However, so far using cosmomc_debug it does not break.
Back to top
View user's profile [ Hidden ] Visit poster's website
Ira *Wolfson



Joined: 24 Jan 2013
Posts: 54
Affiliation: BGU

PostPosted: June 26 2017  Reply with quote

here it is

Code:

forrtl: severe (173): A pointer passed to DEALLOCATE points to an object that cannot be deallocated
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000BA5502  Unknown               Unknown  Unknown
cosmomc_debug      0000000000467915  objectlists_mp_fr         274  ObjectLists.f90
cosmomc_debug      0000000000474812  objectlists_mp_th         496  ObjectLists.f90
cosmomc_debug      0000000000688D9B  samplecollector_m         302  SampleCollector.f90
cosmomc_debug      000000000068F601  samplecollector_m         446  SampleCollector.f90
cosmomc_debug      000000000064947B  montecarlo_mp_tch         148  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007F47F9F76F45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007FA79FAA4330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000AE86A1  cambmain_mp_calcs        2177  cmbmain.f90
cosmomc_debug      0000000000A93E12  cambmain_mp_cltra         302  cmbmain.f90
cosmomc_debug      0000000000B15461  camb_mp_camb_tran          96  camb.f90
cosmomc_debug      00000000006D8AA1  calculator_camb_m         221  Calculator_CAMB.f90
cosmomc_debug      00000000006CF9E3  calclike_cosmolog          81  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007FA79F3E6F45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007F26C4225330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000970D0E  massivenu_mp_nu_r        1661  modules.f90
cosmomc_debug      00000000009AECB9  dtauda_                   243  equations_ppf.f90
cosmomc_debug      000000000092ABE1  rombint_                  148  subroutines.f90
cosmomc_debug      0000000000945F51  modelparams_mp_de         529  modules.f90
cosmomc_debug      0000000000946044  modelparams_mp_ti         538  modules.f90
cosmomc_debug      0000000000AA4DAE  cambmain_mp_initv         783  cmbmain.f90
cosmomc_debug      0000000000A9196D  cambmain_mp_cmbma         157  cmbmain.f90
cosmomc_debug      0000000000B156DB  camb_mp_camb_getr         137  camb.f90
cosmomc_debug      0000000000B14F6C  camb_mp_camb_gett          46  camb.f90
cosmomc_debug      00000000006D7B19  calculator_camb_m         191  Calculator_CAMB.f90
cosmomc_debug      00000000006CF3FB  calclike_cosmolog          77  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007F26C3B67F45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007F98B6F29330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000AE65CD  cambmain_mp_calcs        2174  cmbmain.f90
cosmomc_debug      0000000000A93E12  cambmain_mp_cltra         302  cmbmain.f90
cosmomc_debug      0000000000B15461  camb_mp_camb_tran          96  camb.f90
cosmomc_debug      00000000006D8AA1  calculator_camb_m         221  Calculator_CAMB.f90
cosmomc_debug      00000000006CF9E3  calclike_cosmolog          81  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007F98B686BF45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007FEC51A95330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000AE2A7D  cambmain_mp_calcs        2147  cmbmain.f90
cosmomc_debug      0000000000A93E12  cambmain_mp_cltra         302  cmbmain.f90
cosmomc_debug      0000000000B15461  camb_mp_camb_tran          96  camb.f90
cosmomc_debug      00000000006D8AA1  calculator_camb_m         221  Calculator_CAMB.f90
cosmomc_debug      00000000006CF9E3  calclike_cosmolog          81  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007FEC513D7F45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007F83623AA330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000ADFF5D  cambmain_mp_calcs        2141  cmbmain.f90
cosmomc_debug      0000000000A93E12  cambmain_mp_cltra         302  cmbmain.f90
cosmomc_debug      0000000000B15461  camb_mp_camb_tran          96  camb.f90
cosmomc_debug      00000000006D8AA1  calculator_camb_m         221  Calculator_CAMB.f90
cosmomc_debug      00000000006CF9E3  calclike_cosmolog          81  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007F8361CECF45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007FC35E3F6330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000AE8133  cambmain_mp_calcs        2176  cmbmain.f90
cosmomc_debug      0000000000A93E12  cambmain_mp_cltra         302  cmbmain.f90
cosmomc_debug      0000000000B15461  camb_mp_camb_tran          96  camb.f90
cosmomc_debug      00000000006D8AA1  calculator_camb_m         221  Calculator_CAMB.f90
cosmomc_debug      00000000006CF9E3  calclike_cosmolog          81  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007FC35DD38F45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown
forrtl: error (69): process interrupted (SIGINT)
Image              PC                Routine            Line        Source             
cosmomc_debug      0000000000C8E245  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C8BE67  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2ED24  Unknown               Unknown  Unknown
cosmomc_debug      0000000000C2EB36  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BB53A9  Unknown               Unknown  Unknown
cosmomc_debug      0000000000BBE4BE  Unknown               Unknown  Unknown
libpthread.so.0    00007F23ECC10330  Unknown               Unknown  Unknown
cosmomc_debug      0000000000AE1B1D  cambmain_mp_calcs        2146  cmbmain.f90
cosmomc_debug      0000000000A93E12  cambmain_mp_cltra         302  cmbmain.f90
cosmomc_debug      0000000000B15461  camb_mp_camb_tran          96  camb.f90
cosmomc_debug      00000000006D8AA1  calculator_camb_m         221  Calculator_CAMB.f90
cosmomc_debug      00000000006CF9E3  calclike_cosmolog          81  CalcLike_Cosmology.f90
cosmomc_debug      00000000008D63C8  calclike_mp_theor         308  calclike.f90
cosmomc_debug      00000000008CEA35  calclike_mp_getlo         146  calclike.f90
cosmomc_debug      0000000000647FD5  montecarlo_mp_tsa          94  MCMC.f90
cosmomc_debug      0000000000650939  montecarlo_mp_tfa         369  MCMC.f90
cosmomc_debug      00000000006490C0  montecarlo_mp_tch         144  MCMC.f90
cosmomc_debug      000000000069DB4F  generalsetup_mp_t         137  GeneralSetup.f90
cosmomc_debug      00000000008ED9B0  MAIN__                    268  driver.F90
cosmomc_debug      0000000000410A5E  Unknown               Unknown  Unknown
libc.so.6          00007F23EC552F45  Unknown               Unknown  Unknown
cosmomc_debug      0000000000410969  Unknown               Unknown  Unknown


Back to top
View user's profile [ Hidden ] Visit poster's website
Antony Lewis



Joined: 23 Sep 2004
Posts: 1250
Affiliation: University of Sussex

PostPosted: June 26 2017  Reply with quote

Looks like the issue with latest ifort compiler fixed in

https://github.com/cmbant/CosmoMC/commit/294eed0ce12d667b56628a3db5632ebc6997bb50

- you've definitely pulled latest master changes?
Back to top
View user's profile [ Hidden ] Visit poster's website
Ira *Wolfson



Joined: 24 Jan 2013
Posts: 54
Affiliation: BGU

PostPosted: June 26 2017  Reply with quote

Pulled on 4/6/2017

I am using ubuntu 14.04 X 16.2 compiler,
since I couldn't make ubuntu 16.04 X 17.4 compiler run at all... :(

I could try running on Nov16 version before those changes were made...
Back to top
View user's profile [ Hidden ] Visit poster's website
Antony Lewis



Joined: 23 Sep 2004
Posts: 1250
Affiliation: University of Sussex

PostPosted: June 26 2017  Reply with quote

Could be a problem with the "thin" routine. Don't you already have enough samples? (500,000!)
Back to top
View user's profile [ Hidden ] Visit poster's website
Ira *Wolfson



Joined: 24 Jan 2013
Posts: 54
Affiliation: BGU

PostPosted: June 26 2017  Reply with quote

Yes, I have over 500,000 samples.

And the convergence statistic is at ~ 0.02.
However, am I right in saying that since the code did not converge on its own,
the ends of the Gaussian might not be well behaved?
Back to top
View user's profile [ Hidden ] Visit poster's website
Antony Lewis



Joined: 23 Sep 2004
Posts: 1250
Affiliation: University of Sussex

PostPosted: June 26 2017  Reply with quote

0.02 is usually plenty good enough.
Back to top
View user's profile [ Hidden ] Visit poster's website
Display posts from previous:   
Post new topic   Reply to topic    CosmoCoffee Forum Index -> Computers and software All times are GMT + 5 Hours
Page 1 of 1

 
Jump to:  
You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot vote in polls in this forum


Powered by phpBB © 2001, 2005 phpBB Group. Sponsored by WordWeb online dictionary and dictionary software.