I can install the Planck PLC with no trouble, but when I try to make cosmomc it throws me the following (I am using ifort and mpif90 with the ifort flag).
I tried a global search for the missing files in order to link them in manually, but cannot find them anywhere.
Any ideas are welcome, thanks in advance!
Code: Select all
mpif90 -f90=ifort -o ../cosmomc ReleaseMPI/MiscUtils.o ReleaseMPI/ArrayUtils.o ReleaseMPI/StringUtils.o ReleaseMPI/MpiUtils.o ReleaseMPI/FileUtils.o ReleaseMPI/RandUtils.o ReleaseMPI/ObjectLists.o ReleaseMPI/Interpolation.o ReleaseMPI/IniObjects.o ReleaseMPI/ObjectParamNames.o ReleaseMPI/Matrix_utils_new.o ReleaseMPI/settings.o ReleaseMPI/samples.o ReleaseMPI/IO.o ReleaseMPI/likelihood.o ReleaseMPI/GeneralTypes.o ReleaseMPI/BaseParameters.o ReleaseMPI/propose.o ReleaseMPI/ParamSet.o ReleaseMPI/PowellConstrainedMinimize.o ReleaseMPI/ImportanceSampling.o ReleaseMPI/MCMC.o ReleaseMPI/minimize.o ReleaseMPI/SampleCollector.o ReleaseMPI/GeneralSetup.o ReleaseMPI/CosmologyTypes.o ReleaseMPI/CosmoTheory.o ReleaseMPI/bbn.o ReleaseMPI/Calculator_Cosmology.o ReleaseMPI/CalcLike_Cosmology.o ReleaseMPI/Likelihood_Cosmology.o ReleaseMPI/Calculator_CAMB.o ReleaseMPI/CMB_BK_Planck.o ReleaseMPI/cliklike.o ReleaseMPI/mpk.o ReleaseMPI/wigglez.o ReleaseMPI/bao.o ReleaseMPI/supernovae_Union2.o ReleaseMPI/supernovae_SNLS.o ReleaseMPI/supernovae_JLA.o ReleaseMPI/szcounts.o ReleaseMPI/supernovae.o ReleaseMPI/HST.o ReleaseMPI/CMB.o ReleaseMPI/CMBlikes.o ReleaseMPI/ElementAbundances.o ReleaseMPI/wl.o ReleaseMPI/CosmologyParameterizations.o ReleaseMPI/DataLikelihoods.o ReleaseMPI/calclike.o ReleaseMPI/CosmologyConfig.o ReleaseMPI/driver.o -L../camb/ReleaseMPI -lcamb_recfast -L/mnt/opt/groups/app-qcosmo/cosmomc/planckdata_and_plc/plc-2.0/lib -lclik_f90 -mkl -O3 -no-prec-div -fpp -openmp -xHost -DMPI -DCLIK -I../camb/ReleaseMPI -I/mnt/opt/groups/app-qcosmo/cosmomc/planckdata_and_plc/plc-2.0/include -module ReleaseMPI -IReleaseMPI/
ld: warning: libibmad.so.5, needed by /mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpichf90.so, not found (try using -rpath or -rpath-link)
ld: warning: librdmacm.so.1, needed by /mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpichf90.so, not found (try using -rpath or -rpath-link)
ld: warning: libibumad.so.3, needed by /mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpichf90.so, not found (try using -rpath or -rpath-link)
ld: warning: libibverbs.so.1, needed by /mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpichf90.so, not found (try using -rpath or -rpath-link)
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `mad_get_field@IBMAD_1.3'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `ibv_modify_qp@IBVERBS_1.1'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `umad_release_ca@IBUMAD_1.0'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `umad_register@IBUMAD_1.0'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `rdma_disconnect@RDMACM_1.0'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `ibv_create_qp@IBVERBS_1.1'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `ibv_destroy_qp@IBVERBS_1.1'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `umad_open_port@IBUMAD_1.0'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `ibv_destroy_ah@IBVERBS_1.1'
/mnt/opt/tools/slc6/mvapich2/1.9a/lib/libmpich.so: undefined reference to `ibv_reg_xrc_rcv_qp@IBVERBS_1.1'